- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 28 residues within 4Å:- Chain A: G.35, G.37, G.38, T.39, I.40, D.60, H.61, S.62, N.65, L.85, S.86, I.87, A.108, A.109, A.110, K.112, N.127, I.150, S.151, V.152, K.166, F.188, G.189, N.190, V.191, S.194, S.195
- Ligands: EDO.3
32 PLIP interactions:31 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.152, A:F.188
- Hydrogen bonds: A:G.37, A:T.39, A:T.39, A:T.39, A:I.40, A:H.61, A:S.62, A:N.65, A:S.86, A:I.87, A:A.110, A:K.112, A:N.127, A:K.166, A:V.191, A:S.194, A:S.194, A:S.195
- Water bridges: A:G.38, A:G.41, A:S.62, A:S.62, A:S.86, A:S.194, A:S.195, B:E.63
- Salt bridges: A:K.112, A:K.112
- pi-Stacking: A:H.61, A:H.61
NAD.11: 28 residues within 4Å:- Chain B: G.35, G.37, G.38, T.39, I.40, D.60, H.61, S.62, N.65, L.85, S.86, I.87, A.108, A.109, A.110, K.112, N.127, I.150, S.151, V.152, K.166, F.188, G.189, N.190, V.191, S.194, S.195
- Ligands: EDO.13
30 PLIP interactions:30 interactions with chain B- Hydrophobic interactions: B:V.152, B:F.188
- Hydrogen bonds: B:G.37, B:T.39, B:I.40, B:H.61, B:S.62, B:N.65, B:S.86, B:I.87, B:A.110, B:K.112, B:N.127, B:K.166, B:K.166, B:V.191, B:S.194, B:S.194, B:S.195
- Water bridges: B:G.38, B:G.41, B:S.62, B:S.62, B:S.86, B:S.194, B:S.195
- Salt bridges: B:K.112, B:K.112
- pi-Stacking: B:H.61, B:H.61
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 8 residues within 4Å:- Chain A: K.112, H.113, S.194, S.195, G.196, S.197
- Ligands: UDP.1, NAD.2
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.194, A:S.194
- Water bridges: A:K.112, A:H.113
EDO.4: 4 residues within 4Å:- Chain A: A.204
- Chain B: Y.67, K.68, D.71
2 PLIP interactions:2 interactions with chain B- Water bridges: B:Y.67, B:Y.67
EDO.12: 5 residues within 4Å:- Chain B: G.37, G.38, T.39, S.42
- Ligands: NA.15
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.42, B:S.42
- Water bridges: B:S.195, B:S.195, B:S.195
EDO.13: 8 residues within 4Å:- Chain B: K.112, H.113, S.194, S.195, G.196, S.197
- Ligands: UDP.10, NAD.11
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.112, B:S.194, B:S.194
- Water bridges: B:V.114, B:S.197
EDO.14: 5 residues within 4Å:- Chain A: Y.67, K.68, D.71
- Chain B: K.201, A.204
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Y.67, A:D.71
- 8 x NA: SODIUM ION(Non-functional Binders)
NA.5: 1 residues within 4Å:- Chain A: K.46
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.46, A:K.46
- Water bridges: A:S.42, A:S.42
NA.6: 2 residues within 4Å:- Chain A: D.18, S.20
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.18, A:S.20
NA.7: 2 residues within 4Å:- Chain A: K.77, I.80
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.77
NA.8: 0 residues within 4Å:- (No contacts)
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Water bridges: A:D.71, A:D.72, B:E.210, B:E.210
NA.9: 1 residues within 4Å:- Chain A: D.312
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.312
- Water bridges: A:L.313, A:D.314
NA.15: 2 residues within 4Å:- Chain B: K.46
- Ligands: EDO.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.46, B:K.46
- Water bridges: B:S.42
NA.16: 2 residues within 4Å:- Chain B: K.77, I.80
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.80
NA.17: 2 residues within 4Å:- Chain B: D.18, S.20
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.20, B:S.20
- Water bridges: B:D.19
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Riegert, A.S. et al., Structural and Biochemical Investigation of PglF from Campylobacter jejuni Reveals a New Mechanism for a Member of the Short Chain Dehydrogenase/Reductase Superfamily. Biochemistry (2017)
- Release Date
- 2017-11-08
- Peptides
- WlaL protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Riegert, A.S. et al., Structural and Biochemical Investigation of PglF from Campylobacter jejuni Reveals a New Mechanism for a Member of the Short Chain Dehydrogenase/Reductase Superfamily. Biochemistry (2017)
- Release Date
- 2017-11-08
- Peptides
- WlaL protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B