SMTL ID : 5bn9.1

Crystal structure of ADP bound human Hsp70 NBD mutant R272K.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: G.12, T.13, T.14, Y.15, G.201, G.202, G.230, E.231, D.234, E.268, K.271, K.272, S.275, G.338, G.339, S.340, R.342, I.343, D.366 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:T.13, A:T.14, A:Y.15, A:G.202, A:E.268, A:K.271, A:K.271, A:S.275, A:S.275, A:G.339, A:R.342 Water bridges: A:D.10, A:T.13, A:T.13, A:Y.15, A:Y.15, A:K.71, A:G.203, A:G.203, A:D.366, A:D.366

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 8 residues within 4Å: Chain A: N.57, Q.58, V.59, A.60, L.61, R.258, R.262 Ligands: NA.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.60, A:L.61 Water bridges: A:V.59 Salt bridges: A:R.258

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.171, I.172 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: L.50, I.51, A.54, K.126 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.51, A:I.51, A:I.51 Water bridges: A:A.54 Salt bridges: A:K.126

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Ligands: EPE.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narayanan, D. et al., Nucleotide binding to variants of the HSP70-NBD. To Be Published

Release Date

2016-09-14

Peptides

Heat shock 70 kDa protein 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock 70 kDa protein 1A

Related Entries With Identical Sequence