SMTL ID : 5bny.1

Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

hetero-3-3-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.290 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain B: N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 1 residues within 4Å: Chain C: N.290 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain E: N.23 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG.5: 5 residues within 4Å: Chain F: E.147, E.150, S.151, N.154, T.156 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:E.147

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain A: N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 NAG.7: 2 residues within 4Å: Chain A: K.22, N.23 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain A: N.166, T.168, T.239 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.239 NAG.9: 1 residues within 4Å: Chain C: N.11 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.11 NAG.10: 1 residues within 4Å: Chain C: N.23 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.23 NAG.11: 3 residues within 4Å: Chain C: N.166, T.168, T.239 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:T.239 Hydrogen bonds: C:T.239, C:T.239 NAG.12: 1 residues within 4Å: Chain E: N.11 No protein-ligand interaction detected (PLIP) NAG.13: 3 residues within 4Å: Chain E: N.166, T.168, T.239 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, F. et al., Structural and Functional Studies of Influenza Virus A/H6 Hemagglutinin. Plos One (2015)

Release Date

2015-08-12

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin

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