SMTL ID : 5bp8.2 (1 other biounit)

ent-Copalyl diphosphate synthase from Streptomyces platensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: E.344, R.345, T.346, K.397 Chain B: Q.182 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.345, A:T.346 Water bridges: A:V.343, A:T.346, A:K.397, A:K.397 Salt bridges: A:R.345, A:K.397 SO4.2: 4 residues within 4Å: Chain A: R.8, E.11, L.483, R.511 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.8, A:R.511 SO4.3: 3 residues within 4Å: Chain A: T.470, R.473, R.477 5 PLIP interactions: 5 interactions with chain A Water bridges: A:S.474, A:R.477, A:R.477 Salt bridges: A:R.473, A:R.477 SO4.4: 6 residues within 4Å: Chain A: L.44, D.45, G.46, H.47, R.48, E.49 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.46, A:H.47, A:R.48, A:E.49 Water bridges: A:D.45 Salt bridges: A:R.48 SO4.5: 3 residues within 4Å: Chain A: R.437, A.438, D.439 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.438, A:D.439 Salt bridges: A:R.437 SO4.7: 5 residues within 4Å: Chain A: Q.182 Chain B: E.344, R.345, T.346, K.397 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.345, B:T.346, B:T.346 Water bridges: B:V.343, B:K.397, B:K.397 Salt bridges: B:R.345, B:K.397 SO4.8: 4 residues within 4Å: Chain B: R.8, E.11, L.483, R.511 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.8, B:R.511 SO4.9: 3 residues within 4Å: Chain B: T.470, R.473, R.477 5 PLIP interactions: 5 interactions with chain B Water bridges: B:S.474, B:R.477, B:R.477 Salt bridges: B:R.473, B:R.477 SO4.10: 6 residues within 4Å: Chain B: L.44, D.45, G.46, H.47, R.48, E.49 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.46, B:H.47, B:R.48, B:E.49 Salt bridges: B:R.48 SO4.11: 3 residues within 4Å: Chain B: R.437, A.438, D.439 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.438, B:D.439 Salt bridges: B:R.437

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: N.59, Q.60, D.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.60, A:D.61, A:D.61 Water bridges: A:N.59 EDO.12: 3 residues within 4Å: Chain B: N.59, Q.60, D.61 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.60, B:D.61, B:D.61 Water bridges: B:N.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolf, J.D. et al., Structure of the ent-Copalyl Diphosphate Synthase PtmT2 from Streptomyces platensis CB00739, a Bacterial Type II Diterpene Synthase. J.Am.Chem.Soc. (2016)

Release Date

2015-06-10

Peptides

Ent-copalyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ent-copalyl diphosphate synthase

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