SMTL ID : 5bq2.1

Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase (UDP-N-acetylglucosamine enolpyruvyl transferase, EPT) from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x EPU: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID(Non-covalent)

EPU.1: 21 residues within 4Å: Chain A: K.30, N.31, A.102, I.127, S.129, R.130, P.131, V.132, D.133, L.134, H.135, T.171, V.172, S.173, V.174, T.175, T.315, D.316, V.338, F.339, L.381 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:A.102, A:I.127, A:T.175 Hydrogen bonds: A:N.31, A:D.133, A:L.134, A:H.135, A:V.172, A:V.174, A:T.175, A:T.175, A:D.316, A:R.342 Water bridges: A:K.30, A:S.129, A:S.129, A:S.129, A:R.130, A:R.130, A:R.130, A:R.130, A:R.130, A:T.175, A:T.175, A:E.199, A:R.243, A:T.315, A:T.315, A:V.338, A:R.382, A:R.382, A:R.408, A:R.408 Salt bridges: A:K.30, A:R.130, A:R.130 EPU.3: 21 residues within 4Å: Chain B: K.30, N.31, A.102, I.127, S.129, R.130, P.131, V.132, D.133, L.134, H.135, T.171, V.172, S.173, V.174, T.175, T.315, D.316, V.338, F.339, L.381 36 PLIP interactions: 36 interactions with chain B Hydrophobic interactions: B:A.102, B:I.127, B:T.175 Hydrogen bonds: B:N.31, B:D.133, B:L.134, B:H.135, B:V.172, B:V.174, B:T.175, B:T.175, B:D.316, B:R.342 Water bridges: B:K.30, B:S.129, B:S.129, B:R.130, B:R.130, B:R.130, B:R.130, B:R.130, B:R.130, B:T.171, B:T.175, B:E.199, B:R.243, B:T.315, B:T.315, B:V.338, B:R.382, B:R.382, B:R.408, B:R.408 Salt bridges: B:K.30, B:R.130, B:R.130 EPU.5: 20 residues within 4Å: Chain C: K.30, N.31, A.102, S.129, R.130, P.131, V.132, D.133, L.134, H.135, T.171, V.172, S.173, V.174, T.175, T.315, D.316, V.338, F.339, L.381 33 PLIP interactions: 33 interactions with chain C Hydrophobic interactions: C:A.102, C:T.175 Hydrogen bonds: C:N.31, C:D.133, C:L.134, C:H.135, C:V.172, C:V.174, C:T.175, C:T.175, C:D.316, C:R.342 Water bridges: C:K.30, C:S.129, C:R.130, C:R.130, C:R.130, C:R.130, C:R.130, C:R.130, C:T.171, C:T.175, C:E.199, C:R.243, C:T.315, C:T.315, C:R.382, C:R.382, C:R.408, C:R.408 Salt bridges: C:K.30, C:R.130, C:R.130 EPU.8: 21 residues within 4Å: Chain D: K.30, N.31, A.102, S.129, R.130, P.131, V.132, D.133, L.134, H.135, T.171, V.172, S.173, V.174, T.175, T.315, D.316, V.338, F.339, R.342, L.381 33 PLIP interactions: 33 interactions with chain D Hydrophobic interactions: D:A.102, D:T.175 Hydrogen bonds: D:N.31, D:D.133, D:L.134, D:H.135, D:V.172, D:V.174, D:T.175, D:D.316, D:R.342 Water bridges: D:K.30, D:S.129, D:S.129, D:R.130, D:R.130, D:R.130, D:R.130, D:R.130, D:R.130, D:T.175, D:E.199, D:R.243, D:T.315, D:T.315, D:V.338, D:R.382, D:R.382, D:R.408, D:R.408 Salt bridges: D:K.30, D:R.130, D:R.130

6 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: C.125, R.408 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: C.125, R.408 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain C: C.125, R.408 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain C: N.361 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain D: C.125, R.408 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Chain D: N.361 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase (UDP-N-acetylglucosamine enolpyruvyl transferase, EPT) from Pseudomonas aeruginosa. to be published

Release Date

2015-07-15

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

UDP-N-acetylglucosamine 1-carboxyvinyltransferase