SMTL ID : 5bsj.1

Crystal structure of S63A mutant of human macrophage migration inhibitory factor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.73 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:R.73 Water bridges: B:S.111, B:S.111, B:A.114 SO4.2: 1 residues within 4Å: Chain A: K.77 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.77 SO4.3: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.68, A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.9: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.69, C:A.70, C:Q.71, C:Q.71

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 2 residues within 4Å: Chain A: A.70, R.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.73 IPA.5: 4 residues within 4Å: Chain A: Q.45 Chain B: V.42, Q.45 Chain C: Q.45 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.45

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: Y.95, N.97 Chain B: P.1, M.2, H.62, V.106 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.97, A:N.97, B:P.1, B:P.1 Water bridges: B:I.64 GOL.7: 9 residues within 4Å: Chain B: Y.95, N.97 Chain C: P.1, M.2, H.62, A.63, I.64, M.101, V.106 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:Y.95, B:N.97, B:N.97, C:P.1, C:H.62, C:I.64 GOL.8: 8 residues within 4Å: Chain A: P.1, M.2, H.62, A.63, I.64, V.106 Chain C: Y.95, N.97 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:Y.95, C:N.97, C:N.97 Water bridges: A:P.1, A:I.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pantouris, G. et al., Crystal structure of S63A mutant of human macrophage migration inhibitory factor. To Be Published

Release Date

2016-06-08

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor