SMTL ID : 5bsu.1

Crystal structure of 4-coumarate:CoA ligase complexed with caffeoyl adenylate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 4UV: 5'-O-[(R)-{[(2E)-3-(3,4-dioxocyclohexa-1,5-dien-1-yl)prop-2-enoyl]oxy}(hydroxy)phosphoryl]adenosine(Non-covalent)

4UV.1: 24 residues within 4Å: Chain A: H.237, Y.239, S.243, M.306, G.308, A.309, A.310, P.311, Q.331, G.332, Y.333, G.334, M.335, T.336, P.340, V.341, M.344, C.360, D.420, I.432, R.435, K.437, K.441, Q.446 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.239, A:P.340, A:V.341 Hydrogen bonds: A:S.243, A:A.309, A:Q.331, A:G.332, A:G.334, A:T.336, A:T.336, A:R.435, A:R.435, A:K.437 Water bridges: A:S.189, A:Q.331 Salt bridges: A:H.237, A:H.237, A:K.441, A:K.441 pi-Stacking: A:Y.239, A:Y.333

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: D.181, T.202, K.204, G.392, D.393, I.395, M.396 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.181, A:I.395, A:M.396 Water bridges: A:K.204, A:D.393

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: I.178 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:I.178, H2O.2, H2O.13, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Structural Basis for Specificity and Flexibility in a Plant 4-Coumarate:CoA Ligase. Structure (2015)

Release Date

2016-05-11

Peptides

4-coumarate--CoA ligase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-coumarate--CoA ligase 2

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