SMTL ID : 5btr.3 (2 other biounits)

Crystal structure of SIRT1 in complex with resveratrol and an AMC-containing peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x ACE- ARG- HIS- LYS- FDL: AMC-containing peptide(Non-covalent)

ACE-ARG-HIS-LYS-FDL.1: 21 residues within 4Å: Chain A: Y.45, L.66, T.69, N.86, F.157, H.223, V.272, F.273, F.274, G.275, E.276, N.277, L.278, H.283, K.304, V.305, R.306, P.307 Ligands: STL.3, STL.4, STL.5 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.69, A:F.157, A:V.272, A:V.305, A:P.307 Hydrogen bonds: A:Y.45, A:Y.45, A:Y.45, A:T.69, A:N.86, A:V.272, A:G.275, A:E.276, A:R.306 Salt bridges: A:R.306

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.231, I.233, C.234, C.255, A.265 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.255

3 x STL: RESVERATROL(Non-covalent)

STL.3: 9 residues within 4Å: Chain A: T.69, P.72, D.152, Q.154, D.158, K.304, V.305 Ligands: ACE-ARG-HIS-LYS-FDL.1, STL.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.69, A:Q.154, A:Q.154, A:V.305 Hydrogen bonds: A:D.158 STL.4: 16 residues within 4Å: Chain A: P.72, E.74, L.75, T.79, Q.82, I.83, N.86, D.158, F.274, G.275 Ligands: ACE-ARG-HIS-LYS-FDL.1, ACE-ARG-HIS-LYS-FDL.1, ACE-ARG-HIS-LYS-FDL.1, ACE-ARG-HIS-LYS-FDL.1, STL.3, STL.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.72, A:L.75, A:T.79, A:I.83, A:I.83 Hydrogen bonds: A:E.74, A:N.86 STL.5: 13 residues within 4Å: Chain A: L.62, L.66, P.71, I.83, N.86, E.90, R.306, P.307, L.310 Ligands: ACE-ARG-HIS-LYS-FDL.1, ACE-ARG-HIS-LYS-FDL.1, ACE-ARG-HIS-LYS-FDL.1, STL.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.66, A:I.83, A:I.83, A:N.86, A:R.306, A:P.307, A:L.310 Hydrogen bonds: A:N.86, A:E.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, D. et al., Structural basis for allosteric, substrate-dependent stimulation of SIRT1 activity by resveratrol. Genes Dev. (2015)

Release Date

2015-07-08

Peptides

NAD-dependent protein deacetylase sirtuin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

NAD-dependent protein deacetylase sirtuin-1

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