SMTL ID : 5bu8.2 (1 other biounit)

HK620 Tail Needle crystallized at pH 7.5 and derivatized with Xenon

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: N.63, Q.66 Chain B: N.63, Q.66 Chain C: N.63, Q.66 Ligands: CA.4, CA.7 No protein-ligand interaction detected (PLIP) CA.4: 8 residues within 4Å: Chain A: N.63, Q.66 Chain B: N.63, Q.66 Chain C: N.63, Q.66 Ligands: CA.1, CA.7 No protein-ligand interaction detected (PLIP) CA.7: 8 residues within 4Å: Chain A: N.63, Q.66 Chain B: N.63, Q.66 Chain C: N.63, Q.66 Ligands: CA.1, CA.4 No protein-ligand interaction detected (PLIP)

6 x XE: XENON(Non-covalent)

XE.2: 8 residues within 4Å: Chain A: Y.161, V.169 Chain B: Y.161, V.169 Chain C: Y.161, V.169 Ligands: XE.5, XE.8 No protein-ligand interaction detected (PLIP) XE.3: 8 residues within 4Å: Chain A: L.91, A.94 Chain B: L.91, A.94 Chain C: L.91, A.94 Ligands: XE.6, XE.9 No protein-ligand interaction detected (PLIP) XE.5: 8 residues within 4Å: Chain A: Y.161, V.169 Chain B: Y.161, V.169 Chain C: Y.161, V.169 Ligands: XE.2, XE.8 No protein-ligand interaction detected (PLIP) XE.6: 8 residues within 4Å: Chain A: L.91, A.94 Chain B: L.91, A.94 Chain C: L.91, A.94 Ligands: XE.3, XE.9 No protein-ligand interaction detected (PLIP) XE.8: 8 residues within 4Å: Chain A: Y.161, V.169 Chain B: Y.161, V.169 Chain C: Y.161, V.169 Ligands: XE.2, XE.5 No protein-ligand interaction detected (PLIP) XE.9: 7 residues within 4Å: Chain A: L.91 Chain B: L.91, A.94 Chain C: L.91, A.94 Ligands: XE.3, XE.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhardwaj, A. et al., Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions. J.Biol.Chem. (2016)

Release Date

2015-11-25

Peptides

DNA stabilization protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

DNA stabilization protein

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