SMTL ID : 5bv7.2 (1 other biounit)

Crystal structure of human LCAT (L4F, N5D) in complex with Fab of an agonistic antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-MAN-MAN.1: 9 residues within 4Å: Chain A: S.267, P.269, S.270, F.271, N.272 Chain E: S.199, S.200, G.203, T.204 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:S.199, E:G.203, E:T.204 Water bridges: E:S.200, E:T.204

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.84, S.86, S.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.86, A:S.87 NAG.3: 1 residues within 4Å: Chain A: N.384 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunawardane, R.N. et al., Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism. J.Biol.Chem. (2016)

Release Date

2015-12-16

Peptides

Phosphatidylcholine-sterol acyltransferase: A
27C3 light chain: B
27C3 heavy chain: C
Fab1 light chain: D
Fab1 heavy chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

D
B

E
C

Phosphatidylcholine-sterol acyltransferase

27C3 light chain

27C3 heavy chain

Fab1 light chain

Fab1 heavy chain

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