SMTL ID : 5bvf.1

Tetrahydropyrrolo-diazepenones as inhibitors of ERK2 kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 4VJ: 2-[(1S)-1-(3-chlorophenyl)-2-hydroxyethyl]-8-(2-{[(1S,3R)-3-hydroxycyclopentyl]amino}pyrimidin-4-yl)-2,3,4,5-tetrahydro-1H-pyrrolo[1,2-a][1,4]diazepin-1-one(Non-covalent)

4VJ.1: 24 residues within 4Å: Chain A: I.32, E.34, G.35, A.36, Y.37, G.38, M.39, V.40, A.53, K.55, K.56, Q.106, D.107, L.108, M.109, E.110, T.111, D.112, K.115, S.154, N.155, L.157, C.167, D.168 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.32, A:V.40, A:A.53, A:K.55, A:L.157 Hydrogen bonds: A:M.109, A:M.109, A:D.112 Water bridges: A:D.168 pi-Cation interactions: A:K.55

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.49 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.49 SO4.3: 3 residues within 4Å: Chain A: H.62, Q.63, T.64 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.63, A:T.64, A:T.64 Water bridges: A:Q.67 Salt bridges: A:H.62 SO4.4: 4 residues within 4Å: Chain A: R.192, R.195, H.233, Y.234 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.234 Salt bridges: A:R.192, A:R.195 SO4.5: 6 residues within 4Å: Chain A: T.64, R.68, R.71, R.149, L.171, R.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.71 Salt bridges: A:R.68, A:R.149, A:R.173 SO4.6: 3 residues within 4Å: Chain A: R.16, S.30, Y.31 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.31 Water bridges: A:R.16, A:S.30 Salt bridges: A:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagdanoff, J.T. et al., Tetrahydropyrrolo-diazepenones as inhibitors of ERK2 kinase. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-09-09

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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