SMTL ID : 5bwl.1

Crystal Structure of SIRT5 in Complex with a Coumarin-Labelled Succinyl Peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x LEU- GLY- SLL: Coumarin-labelled succinyl peptide(Non-covalent)

LEU-GLY-SLL.1: 19 residues within 4Å: Chain A: A.74, F.89, Y.90, R.93, I.130, H.146, V.208, V.209, W.210, F.211, G.212, E.213, N.214, L.215, L.220, Y.243, M.247, F.248 Ligands: MCM.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.130, A:V.209, A:L.215, A:L.220, A:Y.243, A:M.247 Hydrogen bonds: A:Y.90, A:Y.90, A:H.146, A:V.209, A:G.212, A:E.213, A:N.214, A:L.215 Water bridges: A:R.93 Salt bridges: A:R.93

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: C.154, S.156, C.157, C.195, E.197, C.200, G.202 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.154, A:C.157, A:C.195, A:C.200

1 x MCM: 7-AMINO-4-METHYL-CHROMEN-2-ONE(Non-covalent)

MCM.3: 7 residues within 4Å: Chain A: R.59, H.146, F.211, G.212, V.242, Y.243 Ligands: LEU-GLY-SLL.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.211, A:F.211, A:Y.243 Hydrogen bonds: A:G.212 Water bridges: A:E.213 Salt bridges: A:R.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gai, W. et al., Crystal Structure of SIRT5 in Complex with a Coumarin-Labelled Succinyl Peptide. To be published

Release Date

2016-07-13

Peptides

NAD-dependent protein deacylase sirtuin-5, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacylase sirtuin-5, mitochondrial