SMTL ID : 5bwo.1

Crystal Structure of Human SIRT3 in Complex with a Palmitoyl H3K9 Peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 19 residues within 4Å: Chain A: K.5 Chain B: P.65, D.66, F.67, R.68, Y.75, P.86, E.87, I.89, F.90, L.105, L.109, Q.138, I.140, H.158, I.201, V.202, F.204, V.234 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.67, B:I.89, B:F.90, B:L.105, B:I.140

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 8 residues within 4Å: Chain B: C.166, V.168, C.169, R.171, C.190, V.192, C.193, G.195 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.166, B:C.169, B:C.190, B:C.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gai, W. et al., Crystal structures of SIRT3 reveal that the alpha 2-alpha 3 loop and alpha 3-helix affect the interaction with long-chain acyl lysine. Febs Lett. (2016)

Release Date

2016-07-13

Peptides

Palmitoyl H3K9 Peptide: A
NAD-dependent protein deacetylase sirtuin-3, mitochondrial: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Palmitoyl H3K9 Peptide

NAD-dependent protein deacetylase sirtuin-3, mitochondrial

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