SMTL ID : 5c05.1

Crystal Structure of Gamma-terpinene Synthase from Thymus vulgaris

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.79, N.80, L.210, R.213, Q.215, F.222 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.80, A:R.213 Water bridges: A:R.79, A:N.80 EDO.2: 5 residues within 4Å: Chain A: Y.296, D.363, D.367, Q.368, T.425 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.367, A:Q.368 Water bridges: A:T.425 EDO.3: 5 residues within 4Å: Chain A: R.124, L.166, R.168, N.504, M.507 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.124, A:L.166, A:R.168 EDO.4: 9 residues within 4Å: Chain A: W.262, R.275, D.276, R.277, I.278, C.281, T.306, T.309, I.310 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.275, A:R.277 EDO.5: 6 residues within 4Å: Chain B: Y.296, D.363, I.364, D.367, Q.368, T.425 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.297, B:T.425 EDO.6: 7 residues within 4Å: Chain B: W.262, R.275, R.277, I.278, C.281, T.309, I.310 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.275, B:R.277, B:R.277 Water bridges: B:R.275, B:D.313 EDO.7: 6 residues within 4Å: Chain B: R.79, N.80, L.210, R.213, Q.215, F.222 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.79, B:R.79, B:L.210 Water bridges: B:R.79, B:N.80 EDO.8: 6 residues within 4Å: Chain B: E.175, R.178, Y.494, R.497, E.498, Q.501 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.178 Water bridges: B:R.497

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, K. et al., Expression, crystallization and structure elucidation of gamma-terpinene synthase from Thymus vulgaris. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-01-13

Peptides

Putative gamma-terpinene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative gamma-terpinene synthase