SMTL ID : 5c0r.1

Crystal Structure of a Generation 3 Influenza Hemagglutinin Stabilized Stem Complexed with the Broadly Neutralizing Antibody C179

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: E.232, E.235, S.236, N.239, T.241, K.246 Chain B: T.52, S.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.232 NAG-NAG.3: 8 residues within 4Å: Chain D: E.232, E.235, S.236, N.239, T.241, K.246 Chain E: T.52, S.67 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.232 NAG-NAG.5: 8 residues within 4Å: Chain G: E.232, E.235, S.236, N.239, T.241, K.246 Chain H: T.52, S.67 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.232

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: R.118, N.122, Y.123, I.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.118, A:R.118, A:N.122 NAG.4: 4 residues within 4Å: Chain D: R.118, N.122, Y.123, I.126 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.118, D:R.118, D:N.122 NAG.6: 4 residues within 4Å: Chain G: R.118, N.122, Y.123, I.126 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:R.118, G:R.118, G:N.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yassine, H.M. et al., Hemagglutinin-stem nanoparticles generate heterosubtypic influenza protection. Nat. Med. (2015)

Release Date

2015-09-02

Peptides

Hemagglutinin, Envelope glycoprotein, Fibritin fusion protein: ADG
C179 Fab light chain: BEH
C179 Fab heavy chain: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

B
L

E
L

H
L

C
H

F
H

I
H

Hemagglutinin, Envelope glycoprotein, Fibritin fusion protein

C179 Fab light chain

C179 Fab heavy chain