SMTL ID : 5c0z.2 (3 other biounits)

The structure of oxidized rat cytochrome c at 1.13 angstroms resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 26 residues within 4Å: Chain A: K.14, C.15, C.18, H.19, T.29, G.30, P.31, L.36, T.41, G.42, F.47, Y.49, T.50, N.53, W.60, L.65, Y.68, L.69, T.79, K.80, M.81, I.82, F.83, I.86, L.95, L.99 25 PLIP interactions: 25 interactions with chain A, Hydrophobic interactions: A:T.29, A:L.36, A:F.47, A:W.60, A:L.65, A:Y.68, A:L.69, A:M.81, A:F.83, A:I.86, A:L.95, A:L.99 Hydrogen bonds: A:G.42, A:Q.43, A:Y.49, A:T.50, A:N.53, A:N.53, A:K.80 Water bridges: A:R.39, A:R.39, A:R.39, A:T.79 pi-Stacking: A:Y.68 Metal complexes: A:H.19

2 x FC6: HEXACYANOFERRATE(3-)(Non-covalent)

FC6.2: 4 residues within 4Å: Chain A: K.88, K.89, G.90, E.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.89, A:G.90, A:E.91 FC6.3: 4 residues within 4Å: Chain A: K.14, G.85, I.86, K.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.14, A:K.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kalpage, H.A. et al., Serine-47 phosphorylation of cytochromecin the mammalian brain regulates cytochromecoxidase and caspase-3 activity. Faseb J. (2019)

Release Date

2016-09-21

Peptides

Cytochrome c, somatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome c, somatic

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