SMTL ID : 5c14.2 (2 other biounits)

Crystal structure of PECAM-1 D1D2 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.75, E.131 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.75, A:R.75, A:E.131 Water bridges: A:E.73 GOL.2: 4 residues within 4Å: Chain A: Q.23, N.24, G.104 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.24

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.27, F.70 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.70 NAG.4: 1 residues within 4Å: Chain A: N.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paddock, C. et al., Structural basis for PECAM-1 homophilic binding. Blood (2016)

Release Date

2016-01-06

Peptides

Platelet endothelial cell adhesion molecule: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Platelet endothelial cell adhesion molecule

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