SMTL ID : 5c15.1

K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 with Manganese

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.52, D.104 Ligands: MN.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.104, H2O.1, H2O.3, H2O.4 MN.2: 4 residues within 4Å: Chain A: D.52, N.249, D.252 Ligands: MN.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.52, A:D.252, H2O.1, H2O.3, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, H. et al., Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res. (2015)

Release Date

2015-10-21

Peptides

Gene 2 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gene 2 protein