SMTL ID : 5c19.1

p97 variant 2 in the apo state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: P.246, G.247, T.248, G.249, K.250, T.251 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.247, A:G.249, A:K.250, A:T.251, A:T.251, A:T.251 SO4.2: 5 residues within 4Å: Chain A: G.520, C.521, G.522, K.523, T.524 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.520, A:C.521, A:G.522, A:K.523, A:T.524, A:T.524 Salt bridges: A:K.523 SO4.3: 6 residues within 4Å: Chain B: P.519, G.520, C.521, G.522, K.523, T.524 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.520, B:C.521, B:G.522, B:K.523, B:T.524 Salt bridges: B:K.523 SO4.4: 6 residues within 4Å: Chain B: P.246, G.247, T.248, G.249, K.250, T.251 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.247, B:T.248, B:G.249, B:K.250, B:T.251 Salt bridges: C:R.358 SO4.5: 5 residues within 4Å: Chain C: G.520, C.521, G.522, K.523, T.524 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.520, C:C.521, C:G.522, C:K.523, C:T.524, C:T.524, C:L.525 Salt bridges: C:K.523 SO4.6: 6 residues within 4Å: Chain C: P.246, G.247, T.248, G.249, K.250, T.251 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.247, C:T.248, C:G.249, C:K.250, C:T.251, C:T.251 SO4.7: 6 residues within 4Å: Chain D: P.246, G.247, T.248, G.249, K.250, T.251 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.247, D:T.248, D:G.249, D:K.250, D:T.251 SO4.8: 6 residues within 4Å: Chain D: P.519, G.520, C.521, G.522, K.523, T.524 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.520, D:C.521, D:G.522, D:K.523, D:T.524, D:T.524 Salt bridges: D:K.523 SO4.9: 7 residues within 4Å: Chain E: P.245, P.246, G.247, T.248, G.249, K.250, T.251 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:G.247, E:T.248, E:G.249, E:K.250, E:T.251 Salt bridges: F:R.358 SO4.10: 6 residues within 4Å: Chain E: P.519, G.520, C.521, G.522, K.523, T.524 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:G.520, E:C.521, E:G.522, E:K.523, E:T.524, E:T.524, E:T.524 Salt bridges: E:K.523 SO4.11: 6 residues within 4Å: Chain F: P.246, G.247, T.248, G.249, K.250, T.251 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.247, F:G.249, F:K.250, F:T.251, F:T.251 SO4.12: 5 residues within 4Å: Chain F: G.520, C.521, G.522, K.523, T.524 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:G.520, F:C.521, F:G.522, F:K.523, F:T.524, F:T.524 Salt bridges: F:K.523

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanzelmann, P. et al., Structural Basis of ATP Hydrolysis and Intersubunit Signaling in the AAA+ ATPase p97. Structure (2016)

Release Date

2016-01-13

Peptides

Transitional endoplasmic reticulum ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Transitional endoplasmic reticulum ATPase

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