SMTL ID : 5c1i.1

m1A58 tRNA methyltransferase mutant - D170A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain B: E.95, G.97, T.98, S.100, G.101, G.102, L.103, T.104, E.121, A.130 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.98, B:T.98, B:S.100, B:G.101, B:L.103, B:T.104, B:T.104 Water bridges: B:G.102 SO4.2: 3 residues within 4Å: Chain B: R.123, P.124, H.125 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.125 Salt bridges: B:R.123 SO4.3: 10 residues within 4Å: Chain D: R.68, E.95, G.97, T.98, G.99, S.100, G.101, G.102, L.103, T.104 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.68, D:T.98, D:S.100, D:G.102, D:L.103, D:T.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Degut, C. et al., The m1A58 modification in eubacterial tRNA: An overview of tRNA recognition and mechanism of catalysis by TrmI. Biophys.Chem. (2016)

Release Date

2015-06-24

Peptides

tRNA (adenine(58)-N(1))-methyltransferase TrmI: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

tRNA (adenine(58)-N(1))-methyltransferase TrmI