SMTL ID : 5c1m.1

Crystal structure of active mu-opioid receptor bound to the agonist BU72

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

hetero-1-1-mer

Ligands

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 4 residues within 4Å: Chain A: T.243, I.251 Ligands: OLC.2, CLR.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.243 OLC.2: 5 residues within 4Å: Chain A: F.190, I.191, I.247, I.255 Ligands: OLC.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.190, A:I.191, A:I.247

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 8 residues within 4Å: Chain A: T.243, P.244, Y.248, I.251, I.257, S.266, C.270 Ligands: OLC.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.244, A:Y.248, A:Y.248, A:I.251, A:I.257

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain A: H.172, P.173, T.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.174, A:T.174 Salt bridges: A:H.172

2 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.5: 7 residues within 4Å: Chain A: T.109, V.112, I.116, D.126, F.127, N.140, M.192 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.126, A:N.132 P6G.6: 4 residues within 4Å: Chain A: V.29, F.33, F.36, Y.40 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.29

1 x VF1: (2R,3S,3aR,5aR,6R,11bR,11cS)-3a-methoxy-3,14-dimethyl-2-phenyl-2,3,3a,6,7,11c-hexahydro-1H-6,11b-(epiminoethano)-3,5a-methanonaphtho[2,1-g]indol-10-ol(Non-covalent)

VF1.7: 14 residues within 4Å: Chain A: H.3, S.4, Q.73, V.92, D.96, Y.97, M.100, V.185, I.245, H.246, V.249, W.267, I.271, Y.275 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.92, A:D.96, A:Y.97, A:V.185, A:I.245, A:W.267, A:I.271 Hydrogen bonds: A:H.3, A:Y.97 Salt bridges: A:D.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, W. et al., Structural insights into mu-opioid receptor activation. Nature (2015)

Release Date

2015-08-05

Peptides

Mu-type opioid receptor: A
Nanobody 39: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Mu-type opioid receptor

Nanobody 39