SMTL ID : 5c26.1

Crystal structure of SYK in complex with compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x GLU- VAL- PTR- GLU- SER- PRO: GLU-VAL-PTR-GLU-SER-PRO(Non-covalent)

GLU-VAL-PTR-GLU-SER-PRO.1: 11 residues within 4Å: Chain A: D.152, R.156, N.157, D.170, H.189, G.190, K.191, W.192, P.193, K.235, G.236 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.189, A:P.193 Hydrogen bonds: A:D.152, A:N.157, A:W.192, A:W.192, A:V.194, A:G.236 Water bridges: A:D.152, A:S.237 Salt bridges: A:R.156

1 x 50H: 3-{8-[(3,4-dimethoxyphenyl)amino]imidazo[1,2-a]pyrazin-6-yl}benzamide(Non-covalent)

50H.2: 15 residues within 4Å: Chain A: L.35, F.40, V.43, A.58, K.60, M.106, E.107, M.108, A.109, E.110, L.111, G.112, P.113, K.116, L.159 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.43, A:V.43 Hydrogen bonds: A:K.60, A:A.109, A:A.109, A:K.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, F. et al., Imidazotriazines: Spleen Tyrosine Kinase (Syk) Inhibitors Identified by Free-Energy Perturbation (FEP). Chemmedchem (2016)

Release Date

2015-10-07

Peptides

Tyrosine-protein kinase SYK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase SYK

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