SMTL ID : 5c27.1

Crystal structure of SYK in complex with compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x GLU- VAL- TYR- GLU- SER: GLU-VAL-TYR-GLU-SER(Non-covalent)

GLU-VAL-TYR-GLU-SER.1: 8 residues within 4Å: Chain A: D.152, R.156, H.189, G.190, K.191, W.192, P.193, G.236 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.193 Hydrogen bonds: A:R.156, A:R.156, A:N.157, A:W.192, A:W.192, A:G.236 Water bridges: A:S.237

1 x 50J: 3-{8-[(3,4-dimethoxyphenyl)amino]imidazo[1,2-a]pyrazin-6-yl}-N-[4-(methylcarbamoyl)phenyl]benzamide(Non-covalent)

50J.2: 17 residues within 4Å: Chain A: L.35, F.40, V.43, A.58, V.91, M.106, E.107, M.108, A.109, E.110, G.112, P.113, N.115, K.116, Q.119, R.156, L.159 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.40, A:F.40, A:V.43, A:V.43, A:P.113, A:R.156 Hydrogen bonds: A:A.109, A:A.109, A:N.115, A:K.116

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.144, G.276, F.277, A.278, A.279 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.144, A:G.276, A:A.278, A:A.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, F. et al., Imidazotriazines: Spleen Tyrosine Kinase (Syk) Inhibitors Identified by Free-Energy Perturbation (FEP). Chemmedchem (2016)

Release Date

2015-10-07

Peptides

Tyrosine-protein kinase SYK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase SYK

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