SMTL ID : 5c2c.1

GWS1B RubisCO: Form II RubisCO derived from uncultivated Gallionellacea species (unliganded form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-hexamer

Ligands

12 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: K.188, K.211, D.213, E.214, H.307 Chain D: N.131 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.213, A:E.214, H2O.3 MG.2: 4 residues within 4Å: Chain A: Q.142, Q.144, S.319, K.320 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.319, H2O.2, H2O.5, H2O.5, H2O.6 MG.4: 5 residues within 4Å: Chain B: K.211, D.213, E.214, H.307 Chain C: N.131 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.213, B:E.214, H2O.17 MG.5: 4 residues within 4Å: Chain B: Q.142, Q.144, S.319, K.320 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:S.319, H2O.13, H2O.15, H2O.16 MG.6: 5 residues within 4Å: Chain B: N.131 Chain C: K.188, K.211, D.213, E.214 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.213, C:E.214 MG.7: 4 residues within 4Å: Chain C: Q.142, Q.144, S.319, K.320 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:S.319, H2O.21, H2O.22, H2O.24, H2O.25 MG.8: 6 residues within 4Å: Chain A: N.131 Chain D: K.188, K.211, D.213, E.214, H.307 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.213, D:E.214, H2O.30 MG.9: 4 residues within 4Å: Chain D: Q.142, Q.144, S.319, K.320 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:S.319, H2O.29, H2O.32, H2O.32, H2O.33 MG.11: 5 residues within 4Å: Chain E: K.211, D.213, E.214, H.307 Chain F: N.131 3 PLIP interactions: 2 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.213, E:E.214, H2O.44 MG.12: 4 residues within 4Å: Chain E: Q.142, Q.144, S.319, K.320 4 PLIP interactions: 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:S.319, H2O.40, H2O.42, H2O.43 MG.13: 5 residues within 4Å: Chain E: N.131 Chain F: K.188, K.211, D.213, E.214 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.213, F:E.214 MG.14: 4 residues within 4Å: Chain F: Q.142, Q.144, S.319, K.320 5 PLIP interactions: 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:S.319, H2O.48, H2O.49, H2O.51, H2O.52

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain B: R.308, H.311, H.341, S.388 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain E: R.308, H.311, H.341, S.388 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Varaljay, V.A. et al., Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria. Environ.Microbiol. (2016)

Release Date

2015-12-16

Peptides

Form II RubisCO: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Form II RubisCO

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