SMTL ID : 5c50.1

Crystal structure of the complex of human Atg101-Atg13 HORMA domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

hetero-1-1-mer

Ligands

5 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 7 residues within 4Å: Chain A: Y.45, S.46, I.47 Chain B: F.10, S.108, Y.109, Y.112 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.109, B:Y.109, B:Y.112 pi-Stacking: B:Y.112 Hydrogen bonds: A:Y.45 Water bridges: A:I.47 BEN.2: 10 residues within 4Å: Chain A: E.9, V.10, S.11, L.95, G.96, Q.97, K.125, V.126, H.127, T.197 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.9, A:L.95, A:K.125, A:H.127 Hydrogen bonds: A:G.96, A:V.126, A:V.126 Water bridges: A:T.197, A:T.197 BEN.3: 5 residues within 4Å: Chain A: L.131, A.132, T.133, E.134, R.137 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:R.137 BEN.4: 7 residues within 4Å: Chain A: D.56, C.57, T.63 Chain B: Y.132, R.133, R.136, K.137 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:C.57 Water bridges: A:D.56, A:C.57, A:R.141 Hydrophobic interactions: B:R.133, B:R.136 pi-Cation interactions: B:R.133 BEN.5: 7 residues within 4Å: Chain B: Q.24, L.27, I.31, K.50, D.51, I.52, P.53 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qi, S. et al., Structure of the Human Atg13-Atg101 HORMA Heterodimer: an Interaction Hub within the ULK1 Complex. Structure (2015)

Release Date

2015-10-14

Peptides

Autophagy-related protein 101: A
Autophagy-related protein 13: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Autophagy-related protein 101

Autophagy-related protein 13