SMTL ID : 5c51.1

Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.43 Å

Oligo State

hetero-oligomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.1101 Chain D: C.22 Ligands: 1RY.3 No protein-ligand interaction detected (PLIP) MG.2: 5 residues within 4Å: Chain A: D.856, V.857, D.858, D.1101 Ligands: 1RY.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.856, A:V.857, A:D.1101

1 x 1RY: [[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate(Covalent)

1RY.3: 17 residues within 4Å: Chain A: R.819, D.856, V.857, D.858, S.859, Q.860, E.861, R.909, K.913, R.914, Y.917, D.1101 Chain D: C.22 Chain E: G.3, G.4 Ligands: MG.1, MG.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.860, A:R.914, A:R.914 Salt bridges: A:R.909, A:K.913, A:K.913, A:K.913

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sohl, C.D. et al., Probing the structural and molecular basis of nucleotide selectivity by human mitochondrial DNA polymerase gamma. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2016-05-11

Peptides

DNA polymerase subunit gamma-1: A
DNA polymerase subunit gamma-2, mitochondrial: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA polymerase subunit gamma-1

DNA polymerase subunit gamma-2, mitochondrial

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