SMTL ID : 5c5a.2 (1 other biounit)

Crystal Structure of HDM2 in complex with Nutlin-3a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x NUT: 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one(Non-covalent)

NUT.1: 19 residues within 4Å: Chain A: L.35, F.36, L.38, G.39, Q.40, I.42, M.43, Y.48, Q.53, H.54, V.56, F.67, F.72, V.74, H.77, I.80, Y.81, I.84 Ligands: CL.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.35, A:I.42, A:V.56, A:V.74, A:I.80 Hydrogen bonds: A:Q.40 pi-Cation interactions: A:H.77 Halogen bonds: A:H.77

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.51 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: L.35, F.36 Ligands: NUT.1 Ligand excluded by PLIP

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.4: 5 residues within 4Å: Chain A: E.6, T.7, T.30, M.31, K.32 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: K.32, E.33 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: K.12, P.13, L.14 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orts, J. et al., NMR Molecular Replacement, NMR2. To Be Published

Release Date

2016-06-29

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase Mdm2

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