SMTL ID : 5c5c.1

Human metabotropic glutamate receptor 7, extracellular ligand binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.66, N.394, D.400, Y.401 Ligands: UNX.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.66, A:D.400, A:Y.401

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: V.166, Q.377, F.378, D.381, T.431, P.432, V.433 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.377, A:T.431 Water bridges: A:G.427, A:T.431

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: I.57, D.60, L.63, L.64 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:I.57, A:D.60, A:L.63, A:L.64, H2O.2 CA.4: 6 residues within 4Å: Chain A: L.154, D.157, Y.160, F.163, R.421, N.438 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:L.154, A:D.157, A:Y.160, A:F.163, A:N.438

11 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 2 residues within 4Å: Chain A: H.294, D.296 No protein-ligand interaction detected (PLIP) UNX.6: 6 residues within 4Å: Chain A: P.24, T.76, A.124, S.125, G.126, V.129 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: R.40, H.45, Y.335, N.339 No protein-ligand interaction detected (PLIP) UNX.8: 4 residues within 4Å: Chain A: S.127, A.148, S.149, T.150 No protein-ligand interaction detected (PLIP) UNX.9: 1 residues within 4Å: Chain A: E.212 No protein-ligand interaction detected (PLIP) UNX.10: 1 residues within 4Å: Ligands: NAG.1 No protein-ligand interaction detected (PLIP) UNX.11: 3 residues within 4Å: Chain A: R.79, D.80, T.81 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain A: L.184, G.185, R.249 No protein-ligand interaction detected (PLIP) UNX.13: 1 residues within 4Å: Chain A: N.247 No protein-ligand interaction detected (PLIP) UNX.14: 3 residues within 4Å: Chain A: L.323, N.326, R.327 No protein-ligand interaction detected (PLIP) UNX.15: 5 residues within 4Å: Chain A: V.119, P.143, G.412, G.413, L.416 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dobrovetsky, E. et al., Human metabotropic glutamate receptor 7, extracellular ligand binding domain. to be published

Release Date

2015-07-15

Peptides

Metabotropic glutamate receptor 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metabotropic glutamate receptor 7

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