SMTL ID : 5c5d.1

Crystal structure of Treponema denticola PurE2-S38D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-octamer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: P.88, P.89, P.90, S.91, G.96, I.99 Chain D: F.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.88, A:S.91, A:S.91 EDO.2: 5 residues within 4Å: Chain A: I.34, R.35 Chain B: D.154, L.157, K.158 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.34 Water bridges: A:R.35, B:D.154 EDO.3: 6 residues within 4Å: Chain A: F.94 Chain B: P.89, P.90, S.91, G.96, I.99 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.91, B:G.96, B:I.99 Water bridges: B:S.91, B:D.98 EDO.4: 7 residues within 4Å: Chain B: F.94 Chain C: P.88, P.89, P.90, S.91, G.96, I.99 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.91, C:S.91 EDO.5: 8 residues within 4Å: Chain C: F.94 Chain D: P.88, P.89, P.90, S.91, G.96, D.98, I.99 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.91 Water bridges: D:P.89, D:S.91 EDO.6: 7 residues within 4Å: Chain E: P.88, P.89, P.90, S.91, G.96, I.99 Chain H: F.94 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:P.88, E:S.91, E:S.91 EDO.7: 5 residues within 4Å: Chain E: I.34, R.35 Chain F: D.154, L.157, K.158 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Water bridges: F:D.154, E:R.35 Hydrogen bonds: E:I.34 EDO.8: 6 residues within 4Å: Chain E: F.94 Chain F: P.89, P.90, S.91, G.96, I.99 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:S.91, F:G.96, F:I.99 Water bridges: F:S.91, F:D.98 EDO.9: 7 residues within 4Å: Chain F: F.94 Chain G: P.88, P.89, P.90, S.91, G.96, I.99 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:S.91, G:S.91 EDO.10: 8 residues within 4Å: Chain G: F.94 Chain H: P.88, P.89, P.90, S.91, G.96, D.98, I.99 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:S.91 Water bridges: H:P.89, H:S.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sullivan, K.L. et al., Function of conserved residues in the class II PurE active site. To be published

Release Date

2016-07-06

Peptides

phosphoribosylaminoimidazole carboxylase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

phosphoribosylaminoimidazole carboxylase