SMTL ID : 5c6s.1

Human Bromodomain and PHD Finger Containing 1, PWWP domain in complex with XST005904a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x 4K8: isoquinoline-3-carboxylic acid(Non-covalent)

4K8.1: 8 residues within 4Å: Chain A: Y.19, Y.22, F.70, D.72, T.76, S.110 Ligands: UNX.5, UNX.12 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.22, A:F.70, A:D.72, A:T.76 Hydrogen bonds: A:D.72 pi-Stacking: A:Y.19, A:Y.22

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: L.9, I.27, D.28, M.31, M.36 Ligand excluded by PLIP

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 4 residues within 4Å: Chain A: K.15, C.16, R.17, G.18 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.17, A:G.18 Water bridges: A:K.84 Salt bridges: A:K.15, A:R.17

15 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 2 residues within 4Å: Chain A: P.20, R.103 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain A: D.72, N.73, S.110 Ligands: 4K8.1 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: F.71, D.72, N.73, R.75 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: D.7, D.10 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain A: S.123 No protein-ligand interaction detected (PLIP) UNX.9: 1 residues within 4Å: Chain A: K.124 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain A: P.44, V.45 No protein-ligand interaction detected (PLIP) UNX.11: 2 residues within 4Å: Chain A: L.9, H.38 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain A: K.74, T.76 Ligands: 4K8.1 No protein-ligand interaction detected (PLIP) UNX.13: 1 residues within 4Å: Chain A: P.29 No protein-ligand interaction detected (PLIP) UNX.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.15: 3 residues within 4Å: Chain A: K.74, R.75, W.77 No protein-ligand interaction detected (PLIP) UNX.16: 1 residues within 4Å: Chain A: S.105 No protein-ligand interaction detected (PLIP) UNX.17: 3 residues within 4Å: Chain A: P.5, Y.66, R.82 No protein-ligand interaction detected (PLIP) UNX.18: 2 residues within 4Å: Chain A: S.4, D.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DOBROVETSKY, E. et al., Human Bromodomain and PHD Finger Containing 1, PWWP domain in complex with XST005904a. to be published

Release Date

2015-07-29

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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