SMTL ID : 5c74.1

Structure of a novel protein arginine methyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: I.17, P.47, Q.48, R.49 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.48, A:R.49 Water bridges: A:R.49 Salt bridges: A:R.49 SO4.5: 4 residues within 4Å: Chain B: I.17, P.47, Q.48, R.49 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.48, B:R.49 Water bridges: B:R.49 Salt bridges: B:R.49

4 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 3 residues within 4Å: Chain A: H.207, H.209 Chain B: E.177 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.207, A:H.209, B:E.177, B:E.177, H2O.9 NI.3: 3 residues within 4Å: Chain A: E.174, H.208, H.210 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.174, A:H.208, A:H.210, H2O.1, H2O.2 NI.4: 3 residues within 4Å: Chain A: D.203 Chain B: H.208, H.210 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.208, B:H.210, A:D.203, A:D.203, H2O.4 NI.6: 1 residues within 4Å: Chain B: H.211 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.211, H2O.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lv, F. et al., Structural basis for Sfm1 functioning as a protein arginine methyltransferase. Cell Discov (2015)

Release Date

2016-01-13

Peptides

Protein arginine N-methyltransferase SFM1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase SFM1