SMTL ID : 5c7g.1

Crystal Structure of the b1 Domain of Human Neuropilin-1 in complex with a bicine molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x BCN: BICINE(Non-covalent)

BCN.1: 9 residues within 4Å: Chain A: Y.31, W.35, T.50, S.80, E.82, T.83, K.85, Y.87 Ligands: NA.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.35, A:T.83, A:Y.87, A:Y.87, A:Y.87 Water bridges: A:E.82

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: Y.87 Ligands: BCN.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richard, M. et al., Design, synthesis and biological evaluation of new peptidomimetic compounds targeting NRP-1 receptorTO BE PUBLISHED. To Be Published

Release Date

2016-07-06

Peptides

Neuropilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuropilin-1