SMTL ID : 5c8g.1 (1 other biounit)

Crystal Structure Analysis of PP-BRD20 from Tb427tmp complexed with BI-2536

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x R78: 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide(Non-covalent)

R78.1: 7 residues within 4Å: Chain A: Y.41, V.46, V.51, Y.56, Y.99, N.100, L.106 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.46, A:V.51, A:Y.56, A:Y.99, A:L.106 Hydrogen bonds: A:N.100 pi-Stacking: A:Y.41

11 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.3: 5 residues within 4Å: Chain A: P.45, V.46, P.63, M.64 Ligands: UNX.6 No protein-ligand interaction detected (PLIP) UNX.4: 1 residues within 4Å: Chain A: S.37 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: Y.41, L.106, D.109 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: V.46, Y.57, P.63 Ligands: UNX.3 No protein-ligand interaction detected (PLIP) UNX.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain A: Q.16, R.17 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: C.28, K.31 No protein-ligand interaction detected (PLIP) UNX.10: 3 residues within 4Å: Chain A: V.59, I.60, T.61 No protein-ligand interaction detected (PLIP) UNX.11: 2 residues within 4Å: Chain A: H.105, L.106 No protein-ligand interaction detected (PLIP) UNX.12: 4 residues within 4Å: Chain A: E.90, W.93, K.94, R.114 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, D.Q. et al., Crystal Structure Analysis of PP-BRD20 from Tb427tmp. to be published

Release Date

2015-07-22

Peptides

PP-BRD20: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PP-BRD20

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