SMTL ID : 5c8w.1 (5 other biounits)

PKG II's Amino Terminal Cyclic Nucleotide Binding Domain (CNB-A) in a complex with cGMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MLA: MALONIC ACID(Non-covalent)

MLA.1: 9 residues within 4Å: Chain A: R.53, I.61, I.62, P.67, G.68, N.69, H.70, F.72, R.108 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.69, A:N.69, A:H.70 Water bridges: A:R.53, A:R.53, A:R.53, A:E.66, A:E.66 Salt bridges: A:R.53, A:H.70, A:H.70, A:R.108

1 x PCG: CYCLIC GUANOSINE MONOPHOSPHATE(Non-covalent)

PCG.2: 14 residues within 4Å: Chain A: I.62, V.81, L.88, S.89, I.91, F.97, G.98, E.99, L.100, A.101, R.108, T.109, A.110, V.112 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.89, A:G.98, A:E.99, A:L.100, A:A.101, A:T.109, A:T.109, A:T.109 Salt bridges: A:R.108

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: Q.64, Q.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.64 Water bridges: A:Q.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campbell, J.C. et al., Structural Basis of Cyclic Nucleotide Selectivity in cGMP-dependent Protein Kinase II. J.Biol.Chem. (2016)

Release Date

2016-01-20

Peptides

cGMP-dependent protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cGMP-dependent protein kinase 2

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