SMTL ID : 5c91.1

NEDD4 HECT with covalently bound indole-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x 4YU: methyl (2E)-4-{[(5-methoxy-1,2-dimethyl-1H-indol-3-yl)carbonyl]amino}but-2-enoate(Covalent)

4YU.1: 12 residues within 4Å: Chain A: E.36, Y.86, Y.87, G.88, L.89, N.103, N.105, S.106, C.109, N.110, H.113, Y.116 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.110 Hydrogen bonds: A:Y.87, A:N.110 pi-Stacking: A:Y.87, A:Y.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kathman, S.G. et al., A Small Molecule That Switches a Ubiquitin Ligase From a Processive to a Distributive Enzymatic Mechanism. J. Am. Chem. Soc. (2015)

Release Date

2015-09-30

Peptides

E3 ubiquitin-protein ligase NEDD4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase NEDD4