SMTL ID : 5c94.1

Infectious bronchitis virus nsp9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-dimer

Ligands

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: V.20, C.28, S.29, E.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.31, A:E.31 PEG.2: 10 residues within 4Å: Chain A: F.78, L.106, S.110, V.113, Q.116 Chain B: M.10, P.11, H.12, G.13, M.104 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.11, B:H.12, B:G.13, A:Q.116 PEG.4: 4 residues within 4Å: Chain B: V.20, C.28, S.29, E.31 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.31 PEG.5: 10 residues within 4Å: Chain A: M.10, P.11, H.12, G.13, M.104 Chain B: F.78, L.106, S.110, V.113, Q.116 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:P.11, A:G.13, B:Q.116

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: N.7, R.98, S.99, I.100 Chain B: S.99 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.7, A:R.98, A:S.99, A:I.100, B:S.99 GOL.6: 5 residues within 4Å: Chain A: S.99 Chain B: N.7, R.98, S.99, I.100 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.7, B:R.98, B:S.99, B:I.100, A:S.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, T. et al., Structural basis for dimerization and RNA binding of avian infectious bronchitis virus nsp9. Protein Sci. (2017)

Release Date

2016-06-29

Peptides

Non-structural protein 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Non-structural protein 9