SMTL ID : 5ca7.2 (1 other biounit)

Human DNA polymerase lambda- MgdGTP binary and complex with 6 paired DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DGT.1: 18 residues within 4Å: Chain A: R.145, G.175, S.176, R.179, C.184, G.185, D.186, D.188, Y.264, F.265, T.266, G.267, S.268, A.269, N.272, R.273 Ligands: MG.2, SO4.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.176, A:S.176, A:R.179, A:G.185, A:D.186, A:A.269, A:N.272 Water bridges: A:D.188, A:D.188 Salt bridges: A:R.145, A:R.179

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.186, D.188 Ligands: DGT.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.186, A:D.188, H2O.1

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.273, R.276 Ligands: DGT.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.273, A:R.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M.S. et al., Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda. J.Am.Chem.Soc. (2016)

Release Date

2016-02-24

Peptides

DNA polymerase lambda: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase lambda

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