SMTL ID : 5cab.1

Structure of Leishmania nucleoside diphostate kinase mutant Del5-Cterm

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.31, H.70, Y.71, T.113, R.124, N.134, H.137 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.124, A:N.134 Salt bridges: A:K.31, A:H.137 SO4.2: 6 residues within 4Å: Chain B: K.31, H.70, Y.71, N.134, C.136, H.137 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.70, B:Y.71, B:N.134 Salt bridges: B:K.31, B:H.137 SO4.3: 7 residues within 4Å: Chain C: K.31, H.70, Y.71, T.113, R.124, N.134, H.137 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.124, C:N.134 Salt bridges: C:K.31, C:H.137 SO4.4: 6 residues within 4Å: Chain D: K.31, H.70, Y.71, N.134, C.136, H.137 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:H.70, D:Y.71, D:N.134 Salt bridges: D:K.31, D:H.137 SO4.5: 7 residues within 4Å: Chain E: K.31, H.70, Y.71, T.113, R.124, N.134, H.137 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:R.124, E:N.134 Salt bridges: E:K.31, E:H.137 SO4.6: 6 residues within 4Å: Chain F: K.31, H.70, Y.71, N.134, C.136, H.137 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:H.70, F:Y.71, F:N.134 Salt bridges: F:K.31, F:H.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vieira, P.S. et al., The role of the C-terminus and Kpn loop in the quaternary structure stability of nucleoside diphosphate kinase from Leishmania parasites. J.Struct.Biol. (2015)

Release Date

2015-10-14

Peptides

Nucleoside diphosphate kinase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Nucleoside diphosphate kinase