SMTL ID : 5cad.1

Crystal structure of the vicilin from Solanum melongena revealed existence of different anionic ligands in structurally similar pockets

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: A.25, G.28 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.25, A:G.28, H2O.7, H2O.8, H2O.10

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: F.228, A.247, Y.260, N.262, R.267, K.346 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.260, A:Y.260, A:N.262 Salt bridges: A:R.267, A:K.346

1 x PCA: PYROGLUTAMIC ACID(Non-covalent)

PCA.3: 8 residues within 4Å: Chain A: F.30, I.54, H.65, C.67, F.73, I.109, A.126, V.135 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:F.30 Salt bridges: A:H.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jain, A. et al., Crystal structure of the vicilin from Solanum melongena reveals existence of different anionic ligands in structurally similar pockets. Sci Rep (2016)

Release Date

2016-04-06

Peptides

SM80.1 Vicilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SM80.1 Vicilin