SMTL ID : 5cag.1 (1 other biounit)

Crystal structure of a putative adhesin (BACOVA_02677) from Bacteroides ovatus ATCC 8483 at 3.00 A resolution (PSI Community Target, Nakayama)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: E.221, R.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.222 Salt bridges: A:R.222 SO4.2: 2 residues within 4Å: Chain A: K.53, K.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.63 Salt bridges: A:K.53 SO4.3: 5 residues within 4Å: Chain A: T.30, D.31, Q.32, Y.118, K.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.31, A:Y.118 Salt bridges: A:K.146 SO4.4: 5 residues within 4Å: Chain A: R.179, R.216, S.218, S.220, E.223 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.218, A:S.218, A:E.223 Salt bridges: A:R.179, A:R.216 SO4.5: 3 residues within 4Å: Chain A: S.218, T.219, S.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.219, A:S.220, A:S.220 SO4.6: 4 residues within 4Å: Chain A: R.84, G.85, E.86, E.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.85, A:E.86, A:E.86, A:E.87 SO4.7: 2 residues within 4Å: Chain A: R.82, N.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.100 Salt bridges: A:R.82 SO4.8: 4 residues within 4Å: Chain A: E.79, S.80, R.82, W.112 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.82 SO4.9: 4 residues within 4Å: Chain A: G.194, D.195, N.196, K.197 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.195, A:N.196, A:N.196, A:K.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., A Distinct Type of Pilus from the Human Microbiome. Cell (2016)

Release Date

2015-10-14

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

Related Entries With Identical Sequence