SMTL ID : 5cci.1

Structure of the Mg2+-bound synaptotagmin-1 SNARE complex (short unit cell form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.10 Å

Oligo State

hetero-1-1-1-1-3-mer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain E: D.163, D.169, D.223, Y.224, D.225 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.163, E:D.163, E:D.169, E:D.223, E:D.225 MG.2: 4 residues within 4Å: Chain E: D.32, D.38, F.91, D.92 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.32, E:D.38, E:F.91, E:D.92 MG.3: 5 residues within 4Å: Chain F: D.32, D.38, D.90, F.91, D.92 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.32, F:D.38, F:F.91 MG.4: 3 residues within 4Å: Chain F: M.162, D.223, D.225 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:M.162, F:D.223, F:D.223 MG.5: 6 residues within 4Å: Chain F: E.206 Chain G: D.32, D.38, D.90, F.91, D.92 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:D.32, G:D.38, G:F.91 MG.6: 3 residues within 4Å: Chain G: M.162, D.223, D.225 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:M.162, G:D.223, G:D.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Q. et al., Architecture of the synaptotagmin-SNARE machinery for neuronal exocytosis. Nature (2015)

Release Date

2015-08-12

Peptides

Vesicle-associated membrane protein 2: A
Syntaxin-1A: B
Synaptosomal-associated protein 25: C
Synaptosomal-associated protein 25: D
Synaptotagmin-1: EFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
F

Vesicle-associated membrane protein 2

Syntaxin-1A

Synaptosomal-associated protein 25

Synaptosomal-associated protein 25

Synaptotagmin-1

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