SMTL ID : 5ccs.1

Human Cyclophilin D Complexed with Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x C4Y: 1-(4-aminobenzyl)-3-{2-oxo-2-[(2R)-2-phenylpyrrolidin-1-yl]ethyl}urea(Non-covalent)

C4Y.1: 14 residues within 4Å: Chain A: R.55, F.60, M.61, Q.63, G.72, T.73, A.101, N.102, T.107, G.109, Q.111, F.113, L.122, H.126 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.60, A:F.113, A:L.122 Hydrogen bonds: A:Q.63, A:N.102, A:N.102, A:N.102 Water bridges: A:S.81, A:A.101, A:G.109, A:Q.111 pi-Stacking: A:F.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gibson, R.P. et al., Human Cyclophilin D Complexed with Inhibitor. To Be Published

Release Date

2016-07-20

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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