SMTL ID : 5ccy.1

2009 H1N1 PA endonuclease in complex with dTMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.41, D.89, E.100, I.101 Ligands: MN.2, TMP.3 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Ligand interactions Metal complexes: A:H.41, A:D.89, A:E.100, A:I.101, TMP.3, TMP.3 MN.2: 5 residues within 4Å: Chain A: H.41, E.61, D.89 Ligands: MN.1, TMP.3 6 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:E.61, A:D.89, H2O.1, H2O.2, H2O.3, TMP.3

1 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)

TMP.3: 11 residues within 4Å: Chain A: Y.24, K.34, I.38, H.41, E.61, D.89, E.100, I.101, K.115 Ligands: MN.1, MN.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.24, A:K.34 Water bridges: A:K.34, A:A.37, A:D.89, A:E.100, A:Y.111, A:K.115, A:K.115 Salt bridges: A:H.41, A:K.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, M.S. et al., Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-03-16

Peptides

Polymerase acidic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polymerase acidic protein

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