SMTL ID : 5cd2.1

The crystal structure of endo-1,4-D-glucanase from Vibrio fischeri ES114

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: D.353, L.354, Y.355, S.356, T.364, K.366, N.369 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.353, A:D.353, A:S.356, A:T.364, A:N.369 Water bridges: A:D.353 GOL.2: 6 residues within 4Å: Chain A: E.55, W.96, A.114, D.116, S.117, Y.183 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.116, A:S.117, A:Y.183 Water bridges: A:E.55, A:E.55, A:E.55, A:N.245, A:N.245, A:N.245, A:N.245, A:N.245, A:R.248 GOL.3: 9 residues within 4Å: Chain A: E.214, T.215, P.217, P.222, V.225, F.232, K.233, K.234, L.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.214, A:K.233

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: R.130, L.131, T.364 Ligand excluded by PLIP

1 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 1 residues within 4Å: Chain A: H.135 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.135, H2O.8, H2O.11, H2O.12, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of endo-1,4-D-glucanase from Vibrio fischeri ES114. To Be Published

Release Date

2015-07-22

Peptides

Endo-1,4-D-glucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-D-glucanase