SMTL ID : 5cd9.1

Crystal structure of the CTD of Drosophila Oskar protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.46, R.52, F.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.53 Salt bridges: A:R.46, A:R.52 SO4.2: 6 residues within 4Å: Chain A: N.16, S.18, R.54, R.55, H.56, E.57 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.16, A:S.18, A:S.18, A:H.56 Water bridges: A:R.55, A:R.55 Salt bridges: A:R.54, A:R.55, A:H.56 SO4.3: 4 residues within 4Å: Chain A: Q.182, A.183, S.184, R.186 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.183, A:S.184, A:S.184 Water bridges: A:R.186 Salt bridges: A:R.186 SO4.4: 4 residues within 4Å: Chain A: Q.182, N.199, K.200, R.203 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.43, A:Q.182, A:K.200 Salt bridges: A:R.203 SO4.5: 3 residues within 4Å: Chain A: R.75, H.109, L.113 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.75, A:H.109 SO4.6: 1 residues within 4Å: Chain A: R.205 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.177 Salt bridges: A:R.177, A:R.205 SO4.7: 3 residues within 4Å: Chain A: N.171, E.172, R.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.172 Salt bridges: A:R.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, N. et al., Structure of Drosophila Oskar reveals a novel RNA binding protein. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-09-02

Peptides

Maternal effect protein oskar: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maternal effect protein oskar