SMTL ID : 5cde.1

R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: H.233, R.327, H.330, H.337, E.359 Chain B: R.71 Ligands: ZN.3 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Water bridges: B:R.71, A:R.327, A:R.327 Salt bridges: B:R.71, A:H.233, A:R.327, A:H.330, A:H.337 SO4.5: 6 residues within 4Å: Chain A: R.71 Chain B: H.233, R.327, H.330, H.337 Ligands: ZN.7 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Water bridges: B:R.327, B:H.337, A:R.71 Salt bridges: B:H.233, B:R.327, B:H.337, A:R.71 SO4.6: 4 residues within 4Å: Chain A: H.141, R.145 Chain B: H.141, R.145 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Water bridges: A:R.145, A:I.152 Salt bridges: A:H.141, A:R.145, B:H.141, B:R.145

7 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: F.220, D.250, D.261, T.263, E.359, E.373 Ligands: ZN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.250, A:D.250, A:D.261, A:E.373, H2O.7 ZN.3: 7 residues within 4Å: Chain A: D.261, H.330, S.357, E.359, E.373 Ligands: SO4.1, ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.261, A:H.330, A:E.359, A:E.373, H2O.7 ZN.4: 2 residues within 4Å: Chain A: H.233 Chain B: E.91 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.233, B:E.91 ZN.7: 7 residues within 4Å: Chain B: D.261, H.330, S.357, E.359, E.373 Ligands: SO4.5, ZN.8 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.261, B:H.330, B:E.359, B:E.373, H2O.16 ZN.8: 7 residues within 4Å: Chain B: F.220, D.250, D.261, T.263, E.359, E.373 Ligands: ZN.7 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.250, B:D.250, B:D.261, B:E.373, H2O.16 ZN.9: 2 residues within 4Å: Chain A: E.91 Chain B: H.233 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:E.91, B:H.233 ZN.10: 3 residues within 4Å: Chain A: H.337 Chain B: S.69, E.70 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:E.70, B:E.70, A:H.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution. To Be Published

Release Date

2016-09-14

Peptides

Proline dipeptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proline dipeptidase