SMTL ID : 5cdf.1

Structure at 2.3 A of the alpha/beta monomer of the F-ATPase from Paracoccus denitrificans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: D.410, L.411, Q.416 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.416 GOL.2: 7 residues within 4Å: Chain A: D.130, V.131, K.132, Y.301, R.305 Chain B: A.60, E.62 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.62, A:R.305 GOL.3: 8 residues within 4Å: Chain A: A.177, I.178, D.181, F.358, R.363, P.364, Q.431, Q.433 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.181 Water bridges: A:T.173 GOL.4: 3 residues within 4Å: Chain A: V.277, R.280, Q.281 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.280 GOL.5: 7 residues within 4Å: Chain A: A.155, M.156, S.377, Q.380, A.388, G.389, K.392 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.156, A:Q.380, A:Q.380 GOL.7: 7 residues within 4Å: Chain A: R.287, P.289 Chain B: I.12, V.15, R.54, L.267, L.268 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.54, B:L.268 GOL.8: 7 residues within 4Å: Chain A: T.68 Chain B: Q.10, D.17, L.48, G.49, E.50, T.52 No protein-ligand interaction detected (PLIP) GOL.9: 6 residues within 4Å: Chain B: D.83, A.84, L.86, R.88, L.206, S.207 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.83, B:L.86, B:R.88

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 6 residues within 4Å: Chain A: D.170, Q.172, T.173, G.174, K.175, T.176 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.172, A:T.173, A:G.174, A:K.175, A:T.176, A:T.176 Water bridges: A:K.175, A:K.175 Salt bridges: A:K.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morales-Rios, E. et al., Structure of a catalytic dimer of the alpha- and beta-subunits of the F-ATPase from Paracoccus denitrificans at 2.3 angstrom resolution. Acta Crystallogr.,Sect.F (2015)

Release Date

2015-10-07

Peptides

ATP synthase subunit alpha: A
ATP synthase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

ATP synthase subunit alpha

ATP synthase subunit beta

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