- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- hetero-oligomer
- Ligands
- 7 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 4 residues within 4Å:- Chain A: G.143, N.144, E.145, R.146
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.143
- Water bridges: A:R.146
GOL.3: 7 residues within 4Å:- Chain A: R.357, T.358, N.361, Y.442, E.445, L.446, I.449
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.357, A:Y.442, A:E.445
- Water bridges: A:K.132, A:R.357
GOL.4: 6 residues within 4Å:- Chain A: Q.47, R.60, D.64
- Chain C: Q.47, R.60, D.64
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:R.60, A:R.60, A:D.64, C:R.60, C:R.60
GOL.8: 5 residues within 4Å:- Chain C: D.139, G.143, N.144, E.145, R.146
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.139, C:N.144
- 3 x MFX: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid(Non-covalent)(Non-functional Binders)
MFX.10: 11 residues within 4Å:- Chain A: S.75
- Chain B: R.45, G.46, E.64
- Chain C: R.113, Y.114
- Chain E: C.12, A.13
- Chain F: T.8, G.9
- Ligands: MG.1
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Salt bridges: C:R.113
- Hydrogen bonds: A:S.75
MFX.11: 11 residues within 4Å:- Chain A: R.113, Y.114
- Chain C: S.75
- Chain D: D.24, R.45, E.64
- Chain E: T.8, G.9
- Chain F: C.12, A.13
- Ligands: MG.6
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D- Salt bridges: A:R.113
- Hydrogen bonds: C:S.75
- Hydrophobic interactions: D:R.45
MFX.13: 4 residues within 4Å:- Chain E: T.19
- Chain F: G.1, A.2
- Ligands: MG.12
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, P.F. et al., Structural basis of DNA gyrase inhibition by antibacterial QPT-1, anticancer drug etoposide and moxifloxacin. Nat Commun (2015)
- Release Date
- 2015-12-16
- Peptides
- DNA gyrase subunit A: AC
DNA gyrase subunit B,DNA gyrase subunit B: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
RC
TB
SD
U
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- hetero-oligomer
- Ligands
- 7 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 3 x MFX: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, P.F. et al., Structural basis of DNA gyrase inhibition by antibacterial QPT-1, anticancer drug etoposide and moxifloxacin. Nat Commun (2015)
- Release Date
- 2015-12-16
- Peptides
- DNA gyrase subunit A: AC
DNA gyrase subunit B,DNA gyrase subunit B: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
RC
TB
SD
U