SMTL ID : 5cfy.1

CRYSTAL STRUCTURE OF GLTPH R397A IN COMPLEX WITH NA+ AND L-ASP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-hexamer

Ligands

6 x ASP: ASPARTIC ACID(Non-covalent)

ASP.1: 15 residues within 4Å: Chain A: R.276, S.277, S.278, M.311, T.314, Y.317, G.354, V.355, P.356, G.357, A.358, G.359, D.394, T.398, N.401 9 PLIP interactions: 1 Ligand-Ligand interactions, 8 interactions with chain A Hydrogen bonds: D.1, A:S.278, A:T.314, A:G.357, A:A.358, A:G.359, A:D.394, A:D.394, A:N.401 ASP.4: 17 residues within 4Å: Chain B: R.276, S.277, S.278, M.311, T.314, Y.317, T.352, A.353, G.354, V.355, P.356, G.357, A.358, G.359, D.394, T.398, N.401 9 PLIP interactions: 8 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: B:T.352 Hydrogen bonds: B:S.278, B:T.314, B:G.357, B:G.359, B:D.394, B:D.394, B:N.401, D.4 ASP.7: 18 residues within 4Å: Chain C: R.276, S.277, S.278, M.311, T.314, Y.317, T.352, A.353, G.354, V.355, P.356, G.357, A.358, G.359, A.360, D.394, T.398, N.401 13 PLIP interactions: 8 interactions with chain C, 5 Ligand-Ligand interactions Hydrophobic interactions: C:T.352 Hydrogen bonds: C:R.276, C:S.278, C:G.357, C:G.359, C:A.360, C:D.394, C:N.401, D.7, D.7, D.7, D.7, D.7 ASP.10: 17 residues within 4Å: Chain D: R.276, S.277, S.278, M.311, T.314, Y.317, T.352, A.353, G.354, V.355, P.356, G.357, A.358, G.359, D.394, T.398, N.401 14 PLIP interactions: 9 interactions with chain D, 5 Ligand-Ligand interactions Hydrophobic interactions: D:T.352 Hydrogen bonds: D:R.276, D:S.278, D:Y.317, D:G.357, D:G.359, D:A.360, D:T.398, D:N.401, D.10, D.10, D.10, D.10, D.10 ASP.13: 14 residues within 4Å: Chain E: R.276, S.277, S.278, M.311, T.314, Y.317, G.354, V.355, G.357, A.358, G.359, D.394, T.398, N.401 8 PLIP interactions: 7 interactions with chain E, 1 Ligand-Ligand interactions Hydrogen bonds: E:S.278, E:T.314, E:Y.317, E:G.357, E:G.359, E:D.394, E:N.401, D.13 ASP.16: 17 residues within 4Å: Chain F: R.276, S.277, S.278, M.311, T.314, Y.317, T.352, A.353, G.354, V.355, P.356, G.357, A.358, G.359, D.394, T.398, N.401 10 PLIP interactions: 9 interactions with chain F, 1 Ligand-Ligand interactions Hydrophobic interactions: F:T.352 Hydrogen bonds: F:S.278, F:T.314, F:Y.317, F:G.357, F:G.359, F:D.394, F:T.398, F:N.401, D.16

12 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: T.308, M.311, S.349, I.350, G.351, T.352 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.349 NA.3: 7 residues within 4Å: Chain A: S.278, G.306, A.307, N.310, M.311, N.401, D.405 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.278, A:D.405 NA.5: 6 residues within 4Å: Chain B: T.308, M.311, S.349, I.350, G.351, T.352 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.349 NA.6: 6 residues within 4Å: Chain B: S.278, G.306, A.307, N.310, N.401, D.405 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.278, B:N.310 NA.8: 7 residues within 4Å: Chain C: T.308, M.311, S.349, I.350, G.351, T.352, A.353 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.352 NA.9: 6 residues within 4Å: Chain C: S.278, G.306, A.307, N.310, N.401, D.405 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.278, C:N.310 NA.11: 6 residues within 4Å: Chain D: T.308, M.311, S.349, I.350, G.351, T.352 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.352 NA.12: 7 residues within 4Å: Chain D: S.278, G.306, A.307, N.310, M.311, N.401, D.405 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.278, D:N.310 NA.14: 6 residues within 4Å: Chain E: T.308, M.311, S.349, I.350, G.351, T.352 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.308 NA.15: 7 residues within 4Å: Chain E: S.278, G.306, A.307, N.310, M.311, N.401, D.405 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.278, E:N.310 NA.17: 6 residues within 4Å: Chain F: T.308, M.311, S.349, I.350, G.351, T.352 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:T.308 NA.18: 6 residues within 4Å: Chain F: S.278, G.306, A.307, N.310, N.401, D.405 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.278, F:A.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdon, G. et al., Coupled ion binding and structural transitions along the transport cycle of glutamate transporters. Elife (2014)

Release Date

2016-04-20

Peptides

425aa long hypothetical proton glutamate symport protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Membrane

We predict this structure to be a membrane protein.
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425aa long hypothetical proton glutamate symport protein