SMTL ID : 5cgw.1

CRYSTAL STRUCTURE OF Fox-4 cephamycinase mutant Y150F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: W.96, Q.133, H.161 Ligands: ACT.8 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.161, H2O.4, H2O.14 ZN.2: 3 residues within 4Å: Chain A: E.6, L.9, H.40 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.6, A:E.6, A:H.40, H2O.11 ZN.3: 2 residues within 4Å: Chain A: H.2, E.362 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.2, A:E.362, H2O.11 ZN.4: 4 residues within 4Å: Chain A: E.125, D.127, K.131 Ligands: ACT.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:E.125, A:D.127, A:D.127, ACT.7 ZN.5: 2 residues within 4Å: Chain A: P.181, H.186 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.186, H2O.3, H2O.12, H2O.13

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 6 residues within 4Å: Chain A: G.64, S.65, K.68, F.151, G.317, S.318 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.65, A:S.65, A:S.318 Water bridges: A:K.68, A:K.68, A:T.316 Salt bridges: A:K.68, A:K.315 ACT.7: 5 residues within 4Å: Chain A: E.125, D.127, S.128, K.131 Ligands: ZN.4 No protein-ligand interaction detected (PLIP) ACT.8: 8 residues within 4Å: Chain A: H.93, A.94, P.95, W.96, H.161, L.162, N.165 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.162 Hydrogen bonds: A:W.96 Water bridges: A:Q.133, A:Q.133 Salt bridges: A:H.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lefurgy, S.T. et al., FOX-4 cephamycinase: an analysis of structure and function. Antimicrob.Agents Chemother. (2015)

Release Date

2016-02-03

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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